Detailed information of SNP:
|
SNP ID:
sf1101270093(Gbrowse)
Chromosome: chr11 Position: 1270093 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 63.63% | 36.37% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101270093 | A->G | LOC_Os11g03370(LOC_Os11g03370.1) | UTR_3_PRIME |