Detailed information of SNP:
|
SNP ID:
sf1101298111(Gbrowse)
Chromosome: chr11 Position: 1298111 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 52.15% | 47.85% |
| All Indica | 748 | 86.23% | 13.77% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 54 | 44.44% | 55.56% |
| Indica I | 353 | 83.57% | 16.43% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 188 | 84.04% | 15.96% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101298111 | C->T | INTERGENIC | None |