Detailed information of SNP:
|
SNP ID:
sf1101315027(Gbrowse)
Chromosome: chr11 Position: 1315027 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1337 | 82.87% | 17.13% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 416 | 49.76% | 50.24% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 287 | 60.98% | 39.02% |
| Tropical Japonica | 74 | 24.32% | 75.68% |
| Japonica Intermediate | 55 | 25.45% | 74.55% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101315027 | A->C | INTERGENIC | None |