Detailed information of SNP:
|
SNP ID:
sf1101319464(Gbrowse)
Chromosome: chr11 Position: 1319464 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 99.13% | 0.87% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 456 | 98.03% | 1.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 98.04% | 1.96% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 95.16% | 4.84% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101319464 | T->C | INTERGENIC | None |