Detailed information of SNP:
|
SNP ID:
sf1101358274(Gbrowse)
Chromosome: chr11 Position: 1358274 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 88.74% | 11.26% |
| All Indica | 758 | 79.55% | 20.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 70.64% | 29.36% |
| Indica II | 193 | 99.48% | 0.52% |
| Indica Intermediate | 204 | 76.47% | 23.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101358274 | G->A | LOC_Os11g03520(LOC_Os11g03520.1) | UTR_3_PRIME |