Detailed information of SNP:
|
SNP ID:
sf1101368744(Gbrowse)
Chromosome: chr11 Position: 1368744 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1231 | 86.84% | 13.16% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 313 | 49.20% | 50.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 215 | 28.37% | 71.63% |
| Tropical Japonica | 60 | 96.67% | 3.33% |
| Japonica Intermediate | 38 | 92.11% | 7.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101368744 | A->G | INTERGENIC | None |