Detailed information of SNP:
|
SNP ID:
sf1101411032(Gbrowse)
Chromosome: chr11 Position: 1411032 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.67% | 41.33% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101411032 | G->A | LOC_Os11g03640(LOC_Os11g03640.1) | Non-Synonymous SNP |