Detailed information of SNP:
|
SNP ID:
sf1101469342(Gbrowse)
Chromosome: chr11 Position: 1469342 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 65.63% | 34.37% |
| All Indica | 786 | 97.46% | 2.54% |
| All Japonica | 425 | 4.47% | 95.53% |
| Aus | 57 | 92.98% | 7.02% |
| Indica I | 363 | 97.52% | 2.48% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 315 | 2.86% | 97.14% |
| Tropical Japonica | 51 | 11.76% | 88.24% |
| Japonica Intermediate | 59 | 6.78% | 93.22% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101469342 | A->C | INTERGENIC | None |