Detailed information of SNP:
|
SNP ID:
sf1101469345(Gbrowse)
Chromosome: chr11 Position: 1469345 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 70.60% | 29.40% |
| All Indica | 789 | 99.24% | 0.76% |
| All Japonica | 480 | 20.83% | 79.17% |
| Aus | 58 | 98.28% | 1.72% |
| Indica I | 366 | 99.18% | 0.82% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 81 | 64.20% | 35.80% |
| Japonica Intermediate | 65 | 23.08% | 76.92% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101469345 | C->T | INTERGENIC | None |