Detailed information of SNP:
|
SNP ID:
sf1101518636(Gbrowse)
Chromosome: chr11 Position: 1518636 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 55.94% | 44.06% |
| All Indica | 730 | 26.30% | 73.70% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 56 | 50.00% | 50.00% |
| Indica I | 339 | 30.68% | 69.32% |
| Indica II | 198 | 26.77% | 73.23% |
| Indica Intermediate | 193 | 18.13% | 81.87% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101518636 | T->C | LOC_Os11g03830(LOC_Os11g03830.1) | INTRON |