Detailed information of SNP:
|
SNP ID:
sf1101528377(Gbrowse)
Chromosome: chr11 Position: 1528377 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1308 | 92.97% | 7.03% |
| All Indica | 700 | 88.57% | 11.43% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 325 | 89.85% | 10.15% |
| Indica II | 190 | 87.37% | 12.63% |
| Indica Intermediate | 185 | 87.57% | 12.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101528377 | A->G | INTERGENIC | None |