Detailed information of SNP:
|
SNP ID:
sf1101630389(Gbrowse)
Chromosome: chr11 Position: 1630389 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 64.88% | 35.12% |
| All Indica | 797 | 44.79% | 55.21% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 212 | 8.02% | 91.98% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101630389 | T->G | LOC_Os11g04030(LOC_Os11g04030.4) | UTR_5_PRIME |
| sf1101630389 | T->G | LOC_Os11g04030(LOC_Os11g04030.1) | UTR_5_PRIME |
| sf1101630389 | T->G | LOC_Os11g04030(LOC_Os11g04030.2) | UTR_5_PRIME |