Detailed information of SNP:
|
SNP ID:
sf1101639853(Gbrowse)
Chromosome: chr11 Position: 1639853 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 69.47% | 30.53% |
| All Indica | 795 | 55.85% | 44.15% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 373 | 21.72% | 78.28% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101639853 | C->T | INTERGENIC | None |