Detailed information of SNP:
|
SNP ID:
sf1101640235(Gbrowse)
Chromosome: chr11 Position: 1640235 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 66.31% | 33.69% |
| All Indica | 799 | 46.93% | 53.07% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101640235 | C->T | LOC_Os11g04060(LOC_Os11g04060.1) | Synonymous |