Detailed information of SNP:
|
SNP ID:
sf1101679249(Gbrowse)
Chromosome: chr11 Position: 1679249 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 94.11% | 5.89% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 490 | 86.73% | 13.27% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 330 | 86.97% | 13.03% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101679249 | A->C | INTERGENIC | None |