Detailed information of SNP:
|
SNP ID:
sf1101699311(Gbrowse)
Chromosome: chr11 Position: 1699311 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 93.53% | 6.47% |
| All Indica | 778 | 89.07% | 10.93% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 201 | 96.02% | 3.98% |
| Indica Intermediate | 206 | 78.64% | 21.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101699311 | A->G | INTERGENIC | None |