Detailed information of SNP:



SNP ID: sf1101700812(Gbrowse)

Chromosome: chr11

Position: 1700812
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 99.01% 0.99%
All Indica799 99.75% 0.25%
All Japonica497 97.79% 2.21%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 88.30% 11.70%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1101700812 C->T INTERGENIC None