Detailed information of SNP:
|
SNP ID:
sf1101782833(Gbrowse)
Chromosome: chr11 Position: 1782833 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 71.19% | 28.81% |
| All Indica | 797 | 54.71% | 45.29% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 211 | 14.69% | 85.31% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101782833 | C->T | LOC_Os11g04300(LOC_Os11g04300.1) | INTRON |