Detailed information of SNP:
|
SNP ID:
sf1101820020(Gbrowse)
Chromosome: chr11 Position: 1820020 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 69.57% | 30.43% |
| All Indica | 796 | 52.39% | 47.61% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 208 | 27.40% | 72.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101820020 | T->G | INTERGENIC | None |