Detailed information of SNP:
|
SNP ID:
sf1101925914(Gbrowse)
Chromosome: chr11 Position: 1925914 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 70.88% | 29.12% |
| All Indica | 795 | 52.70% | 47.30% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 372 | 91.67% | 8.33% |
| Indica II | 213 | 9.86% | 90.14% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101925914 | C->T | INTERGENIC | None |