Detailed information of SNP:
|
SNP ID:
sf1101959396(Gbrowse)
Chromosome: chr11 Position: 1959396 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 69.01% | 30.99% |
| All Indica | 792 | 48.99% | 51.01% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 211 | 7.58% | 92.42% |
| Indica Intermediate | 208 | 25.48% | 74.52% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101959396 | G->A | INTERGENIC | None |