Detailed information of SNP:



SNP ID: sf1101959396(Gbrowse)

Chromosome: chr11

Position: 1959396
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1407 69.01% 30.99%
All Indica792 48.99% 51.01%
All Japonica497 98.59% 1.41%
Aus62 75.81% 24.19%
Indica I373 85.52% 14.48%
Indica II211 7.58% 92.42%
Indica Intermediate208 25.48% 74.52%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1101959396 G->A INTERGENIC None