Detailed information of SNP:
|
SNP ID:
sf1101961356(Gbrowse)
Chromosome: chr11 Position: 1961356 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1161 | 87.77% | 12.23% |
| All Indica | 566 | 79.33% | 20.67% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 52 | 63.46% | 36.54% |
| Indica I | 261 | 80.46% | 19.54% |
| Indica II | 149 | 81.21% | 18.79% |
| Indica Intermediate | 156 | 75.64% | 24.36% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101961356 | G->T | INTERGENIC | None |