Detailed information of SNP:
|
SNP ID:
sf1101961366(Gbrowse)
Chromosome: chr11 Position: 1961366 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1165 | 87.73% | 12.27% |
| All Indica | 570 | 79.12% | 20.88% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 52 | 65.38% | 34.62% |
| Indica I | 263 | 80.61% | 19.39% |
| Indica II | 151 | 80.13% | 19.87% |
| Indica Intermediate | 156 | 75.64% | 24.36% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1101961366 | G->A | INTERGENIC | None |