Detailed information of SNP:
|
SNP ID:
sf1102041373(Gbrowse)
Chromosome: chr11 Position: 2041373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.75% | 29.25% |
| All Indica | 792 | 53.54% | 46.46% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 15.01% | 84.99% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 207 | 78.74% | 21.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102041373 | G->A | INTERGENIC | None |