Detailed information of SNP:
|
SNP ID:
sf1102062475(Gbrowse)
Chromosome: chr11 Position: 2062475 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.18% | 28.82% |
| All Indica | 799 | 54.57% | 45.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102062475 | C->T | INTERGENIC | None |