Detailed information of SNP:
|
SNP ID:
sf1102064261(Gbrowse)
Chromosome: chr11 Position: 2064261 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.90% | 33.10% |
| All Indica | 797 | 47.18% | 52.82% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 210 | 22.38% | 77.62% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102064261 | C->A | LOC_Os11g04860(LOC_Os11g04860.1) | Non-Synonymous SNP |