Detailed information of SNP:
|
SNP ID:
sf1102065595(Gbrowse)
Chromosome: chr11 Position: 2065595 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.83% | 29.17% |
| All Indica | 796 | 53.89% | 46.11% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 15.73% | 84.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102065595 | T->C | INTERGENIC | None |