Detailed information of SNP:
|
SNP ID:
sf1102065647(Gbrowse)
Chromosome: chr11 Position: 2065647 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.55% | 26.45% |
| All Indica | 798 | 57.52% | 42.48% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 210 | 48.57% | 51.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102065647 | C->T | INTERGENIC | None |