Detailed information of SNP:
|
SNP ID:
sf1102066078(Gbrowse)
Chromosome: chr11 Position: 2066078 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 69.76% | 30.24% |
| All Indica | 794 | 53.65% | 46.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 15.51% | 84.49% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102066078 | G->T | INTERGENIC | None |