Detailed information of SNP:
|
SNP ID:
sf1102099144(Gbrowse)
Chromosome: chr11 Position: 2099144 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.49% | 39.51% |
| All Indica | 798 | 36.34% | 63.66% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 10.40% | 89.60% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102099144 | C->T | INTERGENIC | None |