Detailed information of SNP:
|
SNP ID:
sf1102145143(Gbrowse)
Chromosome: chr11 Position: 2145143 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.91% | 42.09% |
| All Indica | 796 | 91.21% | 8.79% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102145143 | G->A | INTERGENIC | None |