Detailed information of SNP:
|
SNP ID:
sf1102149142(Gbrowse)
Chromosome: chr11 Position: 2149142 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 72.78% | 27.22% |
| All Indica | 794 | 55.67% | 44.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 66.13% | 33.87% |
| Indica I | 370 | 18.38% | 81.62% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102149142 | T->A | INTERGENIC | None |