Detailed information of SNP:
|
SNP ID:
sf1102149344(Gbrowse)
Chromosome: chr11 Position: 2149344 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 77.27% | 22.73% |
| All Indica | 762 | 62.60% | 37.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 64.91% | 35.09% |
| Indica I | 346 | 27.75% | 72.25% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 205 | 84.88% | 15.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102149344 | C->A | INTERGENIC | None |