Detailed information of SNP:
|
SNP ID:
sf1102154669(Gbrowse)
Chromosome: chr11 Position: 2154669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 67.19% | 32.81% |
| All Indica | 796 | 47.99% | 52.01% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 212 | 5.66% | 94.34% |
| Indica Intermediate | 209 | 24.88% | 75.12% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102154669 | G->A | INTERGENIC | None |