Detailed information of SNP:
|
SNP ID:
sf1102191600(Gbrowse)
Chromosome: chr11 Position: 2191600 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.05% | 21.95% |
| All Indica | 797 | 65.87% | 34.13% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 16.51% | 83.49% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102191600 | G->A | INTERGENIC | None |