Detailed information of SNP:
|
SNP ID:
sf1102207920(Gbrowse)
Chromosome: chr11 Position: 2207920 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 79.21% | 20.79% |
| All Indica | 794 | 67.25% | 32.75% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 211 | 18.96% | 81.04% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102207920 | G->A | INTERGENIC | None |