Detailed information of SNP:
|
SNP ID:
sf1102212364(Gbrowse)
Chromosome: chr11 Position: 2212364 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.21% | 24.79% |
| All Indica | 796 | 60.80% | 39.20% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102212364 | C->T | INTERGENIC | None |