Detailed information of SNP:
|
SNP ID:
sf1102220240(Gbrowse)
Chromosome: chr11 Position: 2220240 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102220240 | T->C | INTERGENIC | None |