Detailed information of SNP:
|
SNP ID:
sf1102228090(Gbrowse)
Chromosome: chr11 Position: 2228090 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.92% | 29.08% |
| All Indica | 799 | 53.82% | 46.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 15.47% | 84.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102228090 | G->A | LOC_Os11g05090(LOC_Os11g05090.1) | INTRON |