Detailed information of SNP:
|
SNP ID:
sf1102235847(Gbrowse)
Chromosome: chr11 Position: 2235847 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.41% | 37.59% |
| All Indica | 799 | 38.92% | 61.08% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 5.07% | 94.93% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102235847 | C->A | LOC_Os11g05110(LOC_Os11g05110.3) | INTRON |
| sf1102235847 | C->A | LOC_Os11g05110(LOC_Os11g05110.2) | INTRON |
| sf1102235847 | C->A | LOC_Os11g05110(LOC_Os11g05110.1) | INTRON |