Detailed information of SNP:
|
SNP ID:
sf1102239942(Gbrowse)
Chromosome: chr11 Position: 2239942 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 98.48% | 1.52% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 405 | 95.06% | 4.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 93.09% | 6.91% |
| Tropical Japonica | 74 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102239942 | C->T | INTERGENIC | None |