Detailed information of SNP:
|
SNP ID:
sf1102270738(Gbrowse)
Chromosome: chr11 Position: 2270738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1274 | 92.39% | 7.61% |
| All Indica | 665 | 85.71% | 14.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 98.31% | 1.69% |
| Indica I | 249 | 65.86% | 34.14% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102270738 | G->A | INTERGENIC | None |