Detailed information of SNP:
|
SNP ID:
sf1102280389(Gbrowse)
Chromosome: chr11 Position: 2280389 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.17% | 44.83% |
| All Indica | 792 | 87.88% | 12.12% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102280389 | T->A | INTERGENIC | None |