Detailed information of SNP:
|
SNP ID:
sf1102284185(Gbrowse)
Chromosome: chr11 Position: 2284185 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 70.79% | 29.21% |
| All Indica | 795 | 53.21% | 46.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 15.24% | 84.76% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102284185 | C->T | INTERGENIC | None |