Detailed information of SNP:
|
SNP ID:
sf1102370944(Gbrowse)
Chromosome: chr11 Position: 2370944 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 73.10% | 26.90% |
| All Indica | 795 | 56.23% | 43.77% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 15.55% | 84.45% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 57.14% | 42.86% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102370944 | T->A | INTERGENIC | None |