Detailed information of SNP:
|
SNP ID:
sf1102374004(Gbrowse)
Chromosome: chr11 Position: 2374004 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 92.47% | 7.53% |
| All Indica | 726 | 88.02% | 11.98% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 55 | 80.00% | 20.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 159 | 58.49% | 41.51% |
| Indica Intermediate | 192 | 91.15% | 8.85% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102374004 | G->A | INTERGENIC | None |