Detailed information of SNP:
|
SNP ID:
sf1102374549(Gbrowse)
Chromosome: chr11 Position: 2374549 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.38% | 13.62% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102374549 | C->A | INTERGENIC | None |