Detailed information of SNP:
|
SNP ID:
sf1102377083(Gbrowse)
Chromosome: chr11 Position: 2377083 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 98.13% | 1.87% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 426 | 94.60% | 5.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 99.64% | 0.36% |
| Tropical Japonica | 80 | 77.50% | 22.50% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102377083 | A->G | INTERGENIC | None |