Detailed information of SNP:
|
SNP ID:
sf1102396694(Gbrowse)
Chromosome: chr11 Position: 2396694 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.83% | 45.17% |
| All Indica | 799 | 26.16% | 73.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 3.47% | 96.53% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102396694 | C->T | INTERGENIC | None |