Detailed information of SNP:
|
SNP ID:
sf1102423554(Gbrowse)
Chromosome: chr11 Position: 2423554 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1163 | 83.32% | 16.68% |
| All Indica | 572 | 72.38% | 27.62% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 50 | 46.00% | 54.00% |
| Indica I | 334 | 98.50% | 1.50% |
| Indica II | 129 | 6.20% | 93.80% |
| Indica Intermediate | 109 | 70.64% | 29.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 32 | 78.12% | 21.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102423554 | T->C | INTERGENIC | None |